Pattern Recognition in Bioinformatics: 7th IAPR International Conference, PRIB 2012, Tokyo, Japan, November 8-10, 2012, Proceedings (Lecture Notes in Computer Science, 7632)

This book constitutes the refereed proceedings of the 7th International Conference on Pattern Recognition in Bioinformatics, PRIB 2012, held in Tokyo, Japan, in November 2012. The 24 revised full papers presented were carefully reviewed and selected from 33 submissions. Their topics are widely ranging from fundamental techniques, sequence analysis to biological network analysis. The papers are organized in topical sections on generic methods, visualization, image analysis, and platforms, applications of pattern recognition techniques, protein structure and docking, complex data analysis, and sequence analysis. Front Matter....Pages - Robust Community Detection Methods with Resolution Parameter for Complex Detection in Protein Protein Interaction Networks....Pages 1-13 Machine Learning Scoring Functions Based on Random Forest and Support Vector Regression....Pages 14-25 A Genetic Algorithm for Scale-Based Translocon Simulation....Pages 26-37 A Framework of Gene Subset Selection Using Multiobjective Evolutionary Algorithm....Pages 38-48 Multiple Tree Alignment with Weights Applied to Carbohydrates to Extract Binding Recognition Patterns....Pages 49-58 A Unified Adaptive Co-identification Framework for High-D Expression Data....Pages 59-70 Protein Clustering on a Grassmann Manifold....Pages 71-81 Improving the Portability and Performance of jViz.RNA – A Dynamic RNA Visualization Software....Pages 82-93 A Novel Machine Learning Approach for Detecting the Brain Abnormalities from MRI Structural Images....Pages 94-105 An Open Framework for Extensible Multi-stage Bioinformatics Software....Pages 106-117 An Algorithm to Assemble Gene-Protein-Reaction Associations for Genome-Scale Metabolic Model Reconstruction....Pages 118-128 A Machine Learning and Chemometrics Assisted Interpretation of Spectroscopic Data – A NMR-Based Metabolomics Platform for the Assessment of Brazilian Propolis....Pages 129-140 Principal Component Analysis for Bacterial Proteomic Analysis....Pages 141-152 Application of the Multi-modal Relevance Vector Machine to the Problem of Protein Secondary Structure Prediction....Pages 153-165 Cascading Discriminant and Generative Models for Protein Secondary Structure Prediction....Pages 166-177 Improvement of the Protein–Protein Docking Prediction by Introducing a Simple Hydrophobic Interaction Model: An Application to Interaction Pathway Analysis....Pages 178-187 Representation of Protein Secondary Structure Using Bond-Orientational Order Parameters....Pages 188-197 Diagnose the Premalignant Pancreatic Cancer Using High Dimensional Linear Machine....Pages 198-209 Predicting V(D)J Recombination Using Conditional Random Fields....Pages 210-221 A Simple Genetic Algorithm for Biomarker Mining....Pages 222-232 Finding Conserved Regions in Protein Structures Using Support Vector Machines and Structure Alignment....Pages 233-242 Aligning Discovered Patterns from Protein Family Sequences....Pages 243-254 Application of the Burrows-Wheeler Transform for Searching for Approximate Tandem Repeats....Pages 255-266 Pattern Recognition for Subfamily Level Classification of GPCRs Using Motif Distillation and Distinguishing Power Evaluation....Pages 267-276 Back Matter....Pages - This book constitutes the refereed proceedings of the 8th IAPR International Conference on Pattern Recognition in Bioinformatics, PRIB 2014, held in Stockholm, Sweden in August 2014. The 9 revised full papers and 9 revised short papers presented were carefully reviewed and selected from 29 submissions.