High performance computing : ISC High Performance 2017 International Workshops, DRBSD, ExaComm, HCPM, HPC-IODC, IWOPH, IXPUG, P 3MA, VHPC, Visualization at Scale, WOPSSS, Frankfurt, Germany, June 18-22, 2017 : revised selected papers

This book constitutes revised selected papers from 10 workshops that were held as the ISC High Performance 2017 conference in Frankfurt, Germany, in June 2017. The 59 papers presented in this volume were carefully reviewed and selected for inclusion in this book. They stem from the following workshops: Workshop on Virtualization in High-Performance Cloud Computing (VHPC) Visualization at Scale: Deployment Case Studies and Experience Reports International Workshop on Performance Portable Programming Models for Accelerators (P^3MA) OpenPOWER for HPC (IWOPH) International Workshop on Data Reduction for Big Scientific Data (DRBSD) International Workshop on Communication Architectures for HPC, Big Data, Deep Learning and Clouds at Extreme Scale Workshop on HPC Computing in a Post Moore's Law World (HCPM) HPC I/O in the Data Center ( HPC-IODC) Workshop on Performance and Scalability of Storage Systems (WOPSSS) IXPUG: Experiences on Intel Knights Landing at the One Year Mark International Workshop on Communication Architectures for HPC, Big Data, Deep Learning and Clouds at Extreme Scale (ExaComm) Front Matter ....Pages I-XX Front Matter ....Pages 1-1 Toward Decoupling the Selection of Compression Algorithms from Quality Constraints (Julian Kunkel, Anastasiia Novikova, Eugen Betke, Armin Schaare)....Pages 3-14 On the Scalability of Data Reduction Techniques in Current and Upcoming HPC Systems from an Application Perspective (Axel Huebl, René Widera, Felix Schmitt, Alexander Matthes, Norbert Podhorszki, Jong Youl Choi et al.)....Pages 15-29 Toward a Multi-method Approach: Lossy Data Compression for Climate Simulation Data (Allison H. Baker, Haiying Xu, Dorit M. Hammerling, Shaomeng Li, John P. Clyne)....Pages 30-42 Exploration of Pattern-Matching Techniques for Lossy Compression on Cosmology Simulation Data Sets (Dingwen Tao, Sheng Di, Zizhong Chen, Franck Cappello)....Pages 43-54 Front Matter ....Pages 55-55 Design Space Exploration of the Dragonfly Topology (Min Yee Teh, Jeremiah J. Wilke, Keren Bergman, Sébastien Rumley)....Pages 57-74 High-Throughput Sockets over RDMA for the Intel Xeon Phi Coprocessor (Aram Santogidis, Spyros Lalis)....Pages 75-86 Front Matter ....Pages 87-88 Reconfigurable Silicon Photonic Interconnect for Many-Core Architecture (Hang Guan, Sébastien Rumley, Ke Wen, David Donofrio, John Shalf, Keren Bergman)....Pages 89-97 Instruction Set Architectures for Quantum Processing Units (Keith A. Britt, Travis S. Humble)....Pages 98-105 Eliminating Dark Bandwidth: A Data-Centric View of Scalable, Efficient Performance, Post-Moore (Jonathan C. Beard, Joshua Randall)....Pages 106-114 Towards an Integrated Strategy to Preserve Digital Computing Performance Scaling Using Emerging Technologies (Dilip Vasudevan, Anastasiia Butko, George Michelogiannakis, David Donofrio, John Shalf)....Pages 115-123 Front Matter ....Pages 125-125 HPC I/O in the Data Center Workshop (HPC-IODC) (Julian Kunkel, Jay Lofstead, Colin McMurtrie)....Pages 127-131 Simulation of Hierarchical Storage Systems for TCO and QoS (Jakob Luettgau, Julian Kunkel)....Pages 132-144 GPU Erasure Coding for Campaign Storage (Walker Haddock, Matthew L. Curry, Purushotham V. Bangalore, Anthony Skjellum)....Pages 145-159 PIOM-PX: A Framework for Modeling the I/O Behavior of Parallel Scientific Applications (Pilar Gomez-Sanchez, Sandra Mendez, Dolores Rexachs, Emilio Luque)....Pages 160-173 Real-Time I/O-Monitoring of HPC Applications with SIOX, Elasticsearch, Grafana and FUSE (Eugen Betke, Julian Kunkel)....Pages 174-186 Output Performance Study on a Production Petascale Filesystem (Bing Xie, Jeffrey S. Chase, David Dillow, Scott Klasky, Jay Lofstead, Sarp Oral et al.)....Pages 187-200 Front Matter ....Pages 201-204 GPU-Accelerated Particle-in-Cell Code on Minsky (Andreas Herten, Dirk Brömmel, Dirk Pleiter)....Pages 205-219 Pushing Big Data into Accelerators: Can the JVM Saturate Our Hardware? (Johan Peltenburg, Ahmad Hesam, Zaid Al-Ars)....Pages 220-236 The Technological Roadmap of Parallware and Its Alignment with the OpenPOWER Ecosystem (Manuel Arenaz, Oscar Hernandez, Dirk Pleiter)....Pages 237-253 Experiences Evaluating Functionality and Performance of IBM POWER8+ Systems (Verónica G. Vergara Larrea, Wayne Joubert, Mark Berrill, Swen Boehm, Arnold Tharrington, Wael R. Elwasif et al.)....Pages 254-274 Power/Performance Controlling Techniques in OpenPOWER (Todd Rosedahl, Martha Broyles, Charles Lefurgy, Bjorn Christensen, Wu Feng)....Pages 275-289 Performance Evaluation of Container-Based High Performance Computing Ecosystem Using OpenPOWER (Animesh Kuity, Sateesh Kumar Peddoju)....Pages 290-308 Pre-exascale Architectures: OpenPOWER Performance and Usability Assessment for French Scientific Community (Gabriel Hautreux, Alfredo Buttari, Arnaud Beck, Victor Cameo, Dimitri Lecas, Dominique Aubert et al.)....Pages 309-324 Front Matter ....Pages 325-325 IXPUG: Experiences on Intel Knights Landing at the One Year Mark (Estela Suarez, Michael Lysaght, Simon J. Pennycook, Richard A. Gerber)....Pages 327-333 Analyzing Performance of Selected NESAP Applications on the Cori HPC System (Thorsten Kurth, William Arndt, Taylor Barnes, Brandon Cook, Jack Deslippe, Doug Doerfler et al.)....Pages 334-347 On the Mitigation of Cache Hostile Memory Access Patterns on Many-Core CPU Architectures (Tom Deakin, Wayne Gaudin, Simon McIntosh-Smith)....Pages 348-362 From Knights Corner to Landing: A Case Study Based on a Hodgkin-Huxley Neuron Simulator (George Chatzikonstantis, Diego Jiménez, Esteban Meneses, Christos Strydis, Harry Sidiropoulos, Dimitrios Soudris)....Pages 363-375 Porting Tissue-Scale Cardiac Simulations to the Knights Landing Platform (Johannes Langguth, Chad Jarvis, Xing Cai)....Pages 376-388 KART – A Runtime Compilation Library for Improving HPC Application Performance (Matthias Noack, Florian Wende, Georg Zitzlsberger, Michael Klemm, Thomas Steinke)....Pages 389-403 Performance Evaluation of NWChem Ab-Initio Molecular Dynamics (AIMD) Simulations on the Intel® Xeon PhiTM Processor (Eric J. Bylaska, Mathias Jacquelin, Wibe A. de Jong, Jeff R. Hammond, Michael Klemm)....Pages 404-418 Performance Variability on Xeon Phi (Brandon Cook, Thorsten Kurth, Brian Austin, Samuel Williams, Jack Deslippe)....Pages 419-429 Optimizing Fusion PIC Code Performance at Scale on Cori Phase Two (Tuomas Koskela, Jack Deslippe)....Pages 430-440 amask: A Tool for Evaluating Affinity Masks in Many-Core Processors (Kent Milfeld)....Pages 441-451 Front Matter ....Pages 453-456 Analyzing Offloading Inefficiencies in Scalable Heterogeneous Applications (Robert Dietrich, Ronny Tschüter, Guido Juckeland, Andreas Knüpfer)....Pages 457-476 Performance Portability Analysis for Real-Time Simulations of Smoke Propagation Using OpenACC (Anne Küsters, Sandra Wienke, Lukas Arnold)....Pages 477-495 Tuning and Optimization for a Variety of Many-Core Architectures Without Changing a Single Line of Implementation Code Using the Alpaka Library (Alexander Matthes, René Widera, Erik Zenker, Benjamin Worpitz, Axel Huebl, Michael Bussmann)....Pages 496-514 An Embedded Domain Specific Language for General Purpose Vectorization (Przemysław Karpiński, John McDonald)....Pages 515-537 Exploiting Auto-tuning to Analyze and Improve Performance Portability on Many-Core Architectures (James Price, Simon McIntosh-Smith)....Pages 538-556 OpenACC 2.5 Validation Testsuite Targeting Multiple Architectures (Kyle Friedline, Sunita Chandrasekaran, M. Graham Lopez, Oscar Hernandez)....Pages 557-575 Front Matter ....Pages 577-577 A Survey of Fast Packet I/O Technologies for Network Function Virtualization (Giuseppe Lettieri, Vincenzo Maffione, Luigi Rizzo)....Pages 579-590 Machine Learning Using Virtualized GPUs in Cloud Environments (Uday Kurkure, Hari Sivaraman, Lan Vu)....Pages 591-604 A Locality-Aware Communication Layer for Virtualized Clusters (Simon Pickartz, Jonas Baude, Stefan Lankes, Antonello Monti)....Pages 605-616 YASMIN: Efficient Intra-node Communication Using Generic Sockets (Michalis Rozis, Stefanos Gerangelos, Nectarios Koziris)....Pages 617-628 Dynamic Paging Method Switching - An Implementation for KVM (Yu Zhang, Peter Tröger, Matthias Werner)....Pages 629-641 Aggregating and Managing Memory Across Computing Nodes in Cloud Environments (Luis A. Garrido, Paul Carpenter)....Pages 642-652 Front Matter ....Pages 653-653 In-situ Visualization for Computation Workflows (Alejandro Ribes, Ovidiu Mircescu, Anthony Geay, Yvan Fournier)....Pages 655-661 From Big Data to Big Displays High-Performance Visualization at Blue Brain (Stefan Eilemann, Marwan Abdellah, Nicolas Antille, Ahmet Bilgili, Grigory Chevtchenko, Raphael Dumusc et al.)....Pages 662-675 Front Matter ....Pages 677-678 An MPI-IO In-Memory Driver for Non-volatile Pooled Memory of the Kove XPD (Julian Kunkel, Eugen Betke)....Pages 679-690 HetFS: A Heterogeneous File System for Everyone (Georgios Koloventzos, Ramon Nou, Alberto Miranda, Toni Cortes)....Pages 691-700 Scientific Applications Performance Evaluation on Burst Buffer (George S. Markomanolis, Bilel Hadri, Rooh Khurram, Saber Feki)....Pages 701-711 JULEA: A Flexible Storage Framework for HPC (Michael Kuhn)....Pages 712-723 Delivering LHC Software to HPC Compute Elements with CernVM-FS (Jakob Blomer, Gerardo Ganis, Nikola Hardi, Radu Popescu)....Pages 724-730 Scaling the EOS Namespace (Andreas J. Peters, Elvin A. Sindrilaru, Georgios Bitzes)....Pages 731-740 Back Matter ....Pages 741-743 This book constitutes revised selected papers from 10 workshops that were held as the ISC High Performance 2017 conference in Frankfurt, Germany, in June 2017. The 59 papers presented in this volume were carefully reviewed and selected for inclusion in this book. They stem from the following workshops: Workshop on Virtualization in High-Performance Cloud Computing (VHPC) Visualization at Scale: Deployment Case Studies and Experience Reports International Workshop on Performance Portable Programming Models for Accelerators (P 3MA) OpenPOWER for HPC (IWOPH) International Workshop on Data Reduction for Big Scientific Data (DRBSD) International Workshop on Communication Architectures for HPC, Big Data, Deep Learning and Clouds at Extreme Scale Workshop on HPC Computing in a Post Moore's Law World (HCPM) HPC I/O in the Data Center ( HPC-IODC) Workshop on Performance and Scalability of Storage Systems (WOPSSS) IXPUG: Experiences on Intel Knights Landing at the One Year Mark International Workshop on Communication Architectures for HPC, Big Data, Deep Learning and Clouds at Extreme Scale (ExaComm) The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. 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