Biomedical Image Registration : 8th International Workshop, WBIR 2018, Leiden, The Netherlands, June 28-29, 2018, Proceedings

This book constitutes the refereed proceedings of the 8th International Workshop on Biomedical Image Registration, WBIR 2018, held in Leiden, The Netherlands, in June 2018. The 11 full and poster papers included in this volume were carefully reviewed and selected from 17 submitted papers. The papers are organized in the following topical sections: Sliding Motion, Groupwise Registration, Acceleration, and Applications and Evaluation. Preface 6 Organization 8 Contents 10 Sliding Motion 12 An Inhomogeneous Multi-resolution Regularization Concept for Discontinuity Preserving Image Registration 13 1 Introduction 13 2 Method 15 2.1 Transformation Model 16 2.2 Regularization 17 3 Results 18 4 Conclusion 21 References 21 Statistical Motion Mask and Sliding Registration 23 1 Introduction 23 2 Materials and Methods 25 2.1 Statistical Motion Masks 25 2.2 Sliding Registration Framework 26 2.3 Image and Landmark Data 28 3 Results 28 3.1 Statistical Motion Mask Fitting Accuracy 28 3.2 Registration Accuracy 30 4 Discussion and Conclusion 31 References 32 Adaptive Graph Diffusion Regularisation for Discontinuity Preserving Image Registration 34 1 Introduction 34 2 Background 35 3 Method 36 3.1 Adaptive Graph Diffusion Regularisation 36 3.2 Transformation Update 39 4 Results 40 4.1 Synthetic Experiments 40 4.2 DIR-Lab Data Set 41 5 Conclusion 42 References 42 Groupwise Registration 45 Fast Groupwise 4D Deformable Image Registration for Irregular Breathing Motion Estimation 46 1 Introduction 46 1.1 Related Work 47 2 Methods 48 2.1 Classic Groupwise Deformable Image Registration 48 2.2 Groupwise Similarity Measure 48 2.3 Spatio-Temporal Filtering of Displacement Fields 49 3 Experiments 50 3.1 Data Description 50 3.2 Results for Publicly Available 4D Lung CT Dataset 51 3.3 Results for Lung Tumor CTP 52 4 Discussion and Conclusions 53 References 53 A Novel Similarity Measure for Image Sequences 56 1 Introduction 56 2 The Novel Similarity Measure SqN 57 3 Numerical Results for Dynamic Imaging and Serial Sections 59 4 Discussion and Conclusions 63 References 64 Semi-automated Processing of Real-Time CMR Scans for Left Ventricle Segmentation 66 1 Introduction 66 2 Method 67 2.1 Segmenting the Left Ventricle 67 2.2 Computing the Clinical Measures 69 3 Experiments and Results 71 3.1 Data Acquisition 71 3.2 Registration Parameters 71 3.3 Results 72 4 Discussion and Conclusion 74 References 74 Acceleration 76 Averaged Stochastic Optimization for Medical Image Registration Based on Variance Reduction 77 1 Introduction 77 2 Method 79 2.1 Stochastic Optimization for Image Registration 79 2.2 Averaged Stochastic Gradient Descent (Avg-SGD) 79 2.3 Step Size Selection 81 3 Experiments 82 3.1 Evaluation Measures 82 3.2 Nonrigid Registration on 3D Lung CT 83 4 Results 83 5 Discussion 85 6 Conclusion 86 References 86 Applications and Evaluation 88 Registration Evaluation by De-enhancing CT Images 89 1 Introduction 89 2 Method 91 2.1 Hyperintense Lesions and Vessels 91 2.2 Hypointense Lesions 92 2.3 Granularity and Borders 93 2.4 Parameter Settings 93 3 Experiments 93 3.1 Data 93 3.2 Registration Algorithm Evaluation 94 4 Results 94 4.1 De-enhancement 94 4.2 Registration Accuracy 94 5 Discussion 95 6 Conclusion 98 References 98 Evaluation of Multi-metric Registration for Online Adaptive Proton Therapy of Prostate Cancer 100 1 Introduction 100 2 Materials and Methods 101 2.1 Dataset 101 2.2 Dilated Convolution Neural Network Architecture (DCNN) 102 2.3 Image Registration 103 2.4 Registration Performance Evaluation 104 3 Experimental Results 105 3.1 DCNN Segmentation Performance 105 3.2 Registration Performance 105 4 Discussion and Conclusion 106 References 109 Instrument Pose Estimation Using Registration for Otobasis Surgery 111 1 Introduction 111 2 Methods 113 3 Experiments 116 4 Results and Discussion 117 5 Conclusion 119 References 119 Local Image Registration Uncertainty Estimation Using Polynomial Chaos Expansions 121 1 Introduction 121 2 Method 123 2.1 Uncertainty in Image Registration 123 2.2 Polynomial Chaos Expansion 123 2.3 Local Image Registration Uncertainty Estimation with PCE 124 3 Experiments and Results 125 3.1 Dataset 125 3.2 Experiments 125 3.3 Results 126 4 Discussion and Conclusion 129 References 130 Author Index 132 Front Matter ....Pages I-X Front Matter ....Pages 1-1 An Inhomogeneous Multi-resolution Regularization Concept for Discontinuity Preserving Image Registration (Christoph Jud, Robin Sandkühler, Philippe C. Cattin)....Pages 3-12 Statistical Motion Mask and Sliding Registration (Björn Eiben, Elena H. Tran, Martin J. Menten, Uwe Oelfke, David J. Hawkes, Jamie R. McClelland)....Pages 13-23 Adaptive Graph Diffusion Regularisation for Discontinuity Preserving Image Registration (Robin Sandkühler, Christoph Jud, Simon Pezold, Philippe C. Cattin)....Pages 24-34 Front Matter ....Pages 35-35 Fast Groupwise 4D Deformable Image Registration for Irregular Breathing Motion Estimation (Bartłomiej W. Papież, Daniel R. McGowan, Michael Skwarski, Geoff S. Higgins, Julia A. Schnabel, Michael Brady)....Pages 37-46 A Novel Similarity Measure for Image Sequences (Kai Brehmer, Benjamin Wacker, Jan Modersitzki)....Pages 47-56 Semi-automated Processing of Real-Time CMR Scans for Left Ventricle Segmentation (Rahil Shahzad, Martin Fasshauer, Boudewijn P. F. Lelieveldt, Joachim Lotz, Rob van der Geest)....Pages 57-66 Front Matter ....Pages 67-67 Averaged Stochastic Optimization for Medical Image Registration Based on Variance Reduction (Wei Sun, Dirk H. J. Poot, Xuan Yang, Wiro J. Niessen, Stefan Klein)....Pages 69-79 Front Matter ....Pages 81-81 Registration Evaluation by De-enhancing CT Images (Manh Ha Luu, Hassan Boulkhrif, Adriaan Moelker, Theo van Walsum)....Pages 83-93 Evaluation of Multi-metric Registration for Online Adaptive Proton Therapy of Prostate Cancer (Mohamed S. Elmahdy, Thyrza Jagt, Sahar Yousefi, Hessam Sokooti, Roel Zinkstok, Mischa Hoogeman et al.)....Pages 94-104 Instrument Pose Estimation Using Registration for Otobasis Surgery (David Kügler, Martin Andrade Jastrzebski, Anirban Mukhopadhyay)....Pages 105-114 Local Image Registration Uncertainty Estimation Using Polynomial Chaos Expansions (Gokhan Gunay, Sebastian van der Voort, Manh Ha Luu, Adriaan Moelker, Stefan Klein)....Pages 115-125 Back Matter ....Pages 127-127